3JAA Transferase Dna date May 19, 2015
title Human Dna Polymerase Eta In Complex With Normal Dna And Inco Nucleotide (Nrm)
authors W.C.Y.Lau, Y.Li, Q.Zhang, M.S.Y.Huen
compound source
Molecule: Dna Polymerase Eta
Chain: A
Fragment: Catalytic Core (Residues 1-432)
Synonym: Rad30 Homolog A, Xeroderma Pigmentosum Variant Typ
Ec: 2.7.7.7
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Polh, Rad30, Rad30a, Xpv
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28

Molecule: Dna (5'-D(Tcpaptptpaptpgpapcpgpcpt)-
Chain: T
Fragment: Dna Template
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna (5'-D(Tpapgpcpgptpcpapt)-3')
Chain: P
Fragment: Dna Primer
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 22.00 Å
ligand DZ4, GOL, MG enzyme Transferase E.C.2.7.7.7 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceMolecular architecture of the Ub-PCNA/Pol eta complex bound to DNA., Lau WC, Li Y, Zhang Q, Huen MS, Sci Rep. 2015 Oct 27;5:15759. doi: 10.1038/srep15759. PMID:26503230
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (93 Kb) [Save to disk]
  • Biological Unit Coordinates (3jaa.pdb1.gz) 88 Kb
  • LPC: Ligand-Protein Contacts for 3JAA
  • CSU: Contacts of Structural Units for 3JAA
  • Retrieve 3JAA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3JAA from S2C, [Save to disk]
  • View 3JAA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3JAA
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3jaa_T] [3jaa] [3jaa_P] [3jaa_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3JAA
  • Community annotation for 3JAA at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science