3JTY	Transport Protein	date	Sep 14, 2009
title	Crystal Structure Of A Benf-Like Porin From Pseudomonas Fluo Pf-5
authors	P.Sampathkumar, F.Lu, X.Zhao, S.Wasserman, M.Iuzuka, K.Bain, M.Rut T.Gheyi, S.Atwell, J.Luz, J.Gilmore, J.M.Sauder, S.K.Burley, New Research Center For Structural Genomics (Nysgxrc)
compound		source
Molecule: Benf-Like Porin Chain: A, B, C, D Fragment: Residues 30 -420 Engineered: Yes		Organism_scientific: Pseudomonas Fluorescens Pf-5 Organism_taxid: 220664 Strain: Pf-5 Atcc Baa-477 Gene: Pfl_1329, Pfl_1329; Q4kh25_psef5 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3)-Codon+Ril Expression_system_vector_type: Plasmid Expression_system_plasmid: Bc-Psgx3(Bc); Modified Pet26b
symmetry	Space Group: P 1 21 1	R_factor 0.220 R_Free 0.275
crystal cell	length a length b length c angle alpha angle beta angle gamma 62.103 210.624 84.066 90.00 97.76 90.00
method	X-Ray Diffraction	resolution	2.58 Å
ligand	LDA	enzyme
Genes	PFL, PFL
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Structure of a putative BenF-like porin from Pseudomonas fluorescens Pf-5 at 2.6 A resolution., Sampathkumar P, Lu F, Zhao X, Li Z, Gilmore J, Bain K, Rutter ME, Gheyi T, Schwinn KD, Bonanno JB, Pieper U, Fajardo JE, Fiser A, Almo SC, Swaminathan S, Chance MR, Baker D, Atwell S, Thompson DA, Emtage JS, Wasserman SR, Sali A, Sauder JM, Burley SK, Proteins. 2010 Nov 1;78(14):3056-62. PMID:20737437

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (238 Kb) [Save to disk] Biological Unit Coordinates (3jty.pdb1.gz) 61 Kb Biological Unit Coordinates (3jty.pdb2.gz) 60 Kb Biological Unit Coordinates (3jty.pdb3.gz) 61 Kb Biological Unit Coordinates (3jty.pdb4.gz) 61 Kb LPC: Ligand-Protein Contacts for 3JTY CSU: Contacts of Structural Units for 3JTY Structure Factors (1012 Kb) Retrieve 3JTY in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3JTY from S2C, [Save to disk] Re-refined 3jty structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3JTY in 3D

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Visual 3D analysis of 3JTY

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3JTY, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3jty_A] [3jty] [3jty_C] [3jty_D] [3jty_B] SWISS-PROT database: [Q4KH25] Domain organization of [Q4KH25_PSEF5] by SWISSPFAM

Other resources with information on 3JTY

Community annotation for 3JTY at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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