3JYO	Oxidoreductase	date	Sep 22, 2009
title	Quinate Dehydrogenase From Corynebacterium Glutamicum In Com Nad
authors	A.Hoeppner, K.Niefind, D.Schomburg
compound		source
Molecule: Quinateshikimate Dehydrogenase Chain: A Synonym: Nad(+)-Dependent Quinate Dehydrogenase, Qdh, Cglqd Ec: 1.1.1.24, 1.1.1.- Engineered: Yes		Organism_scientific: Corynebacterium Glutamicum Organism_common: Brevibacterium Flavum Organism_taxid: 196627 Strain: Atcc13032 Gene: Aroe, Cg0504, Cgl0424 Expression_system: Escherichia Coli Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pnhis
symmetry	Space Group: C 1 2 1	R_factor 0.163 R_Free 0.194
crystal cell	length a length b length c angle alpha angle beta angle gamma 121.450 63.280 36.340 90.00 94.46 90.00
method	X-Ray Diffraction	resolution	1.00 Å
ligand	NAD	enzyme	Oxidoreductase E.C.1.1.1.24 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Enzyme-substrate complexes of the quinate/shikimate dehydrogenase from Corynebacterium glutamicum enable new insights in substrate and cofactor binding, specificity and discrimination., Hoppner A, Schomburg D, Niefind K, Biol Chem. 2013 Aug 8. pii:, /j/bchm.just-accepted/hsz-2013-0170/hsz-2013-0170.xml. doi:, 10.1515/hsz-2013-0170. PMID:23929881

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (112 Kb) [Save to disk] Biological Unit Coordinates (3jyo.pdb1.gz) 212 Kb LPC: Ligand-Protein Contacts for 3JYO CSU: Contacts of Structural Units for 3JYO Structure Factors (2051 Kb) Retrieve 3JYO in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3JYO from S2C, [Save to disk] Re-refined 3jyo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3JYO in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3JYO

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Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3JYO, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3jyo_A] [3jyo] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3JYO

Community annotation for 3JYO at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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