3JYQ Oxidoreductase date Sep 22, 2009
title Quinate Dehydrogenase From Corynebacterium Glutamicum In Com Shikimate And Nadh
authors A.Hoeppner, D.Schomburg, K.Niefind
compound source
Molecule: Quinateshikimate Dehydrogenase
Chain: A
Fragment: Qdh
Synonym: Nad(+)-Dependent Quinate Dehydrogenase, Qdh, Cglqd
Ec: 1.1.1.24, 1.1.1.-
Engineered: Yes
Organism_scientific: Corynebacterium Glutamicum
Organism_common: Brevibacterium Flavum
Organism_taxid: 196627
Strain: Atcc13032
Gene: Aroe, Cg0504, Cgl0424
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnhis
symmetry Space Group: C 1 2 1
R_factor 0.149 R_Free 0.174
crystal
cell
length a length b length c angle alpha angle beta angle gamma
120.920 63.390 35.670 90.00 94.34 90.00
method X-Ray Diffractionresolution 1.16 Å
ligand NAD, SKM enzyme Oxidoreductase E.C.1.1.1.24 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceEnzyme-substrate complexes of the quinate/shikimate dehydrogenase from Corynebacterium glutamicum enable new insights in substrate and cofactor binding, specificity and discrimination., Hoppner A, Schomburg D, Niefind K, Biol Chem. 2013 Aug 8. pii:, /j/bchm.just-accepted/hsz-2013-0170/hsz-2013-0170.xml. doi:, 10.1515/hsz-2013-0170. PMID:23929881
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (108 Kb) [Save to disk]
  • Biological Unit Coordinates (3jyq.pdb1.gz) 204 Kb
  • LPC: Ligand-Protein Contacts for 3JYQ
  • CSU: Contacts of Structural Units for 3JYQ
  • Structure Factors (1279 Kb)
  • Retrieve 3JYQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3JYQ from S2C, [Save to disk]
  • Re-refined 3jyq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3JYQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3JYQ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3JYQ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3jyq_A] [3jyq]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3JYQ
  • Community annotation for 3JYQ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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