3K5J Protein Binding date Oct 07, 2009
title Crystal Structure Of Putative Sufu (Suppressor Of Fused Prot Homolog (Yp_208451.1) From Neisseria Gonorrhoeae Fa 1090 At Resolution
authors Joint Center For Structural Genomics (Jcsg)
compound source
Molecule: Suppressor Of Fused Family Protein
Chain: A
Engineered: Yes
 Organism_scientific: Neisseria Gonorrhoeae
Organism_taxid: 242231
Strain: Atcc 700825 Fa 1090
Gene: Ngo_1391
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Hk100
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Speedet
symmetry Space Group: P 32 2 1
R_factor 0.134 R_Free 0.162
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.719 50.719 143.596 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.40 Å
ligand GOL, MSE, SO4 enzyme
Gene YP
Primary referenceThe crystal structure of a bacterial Sufu-like protein defines a novel group of bacterial proteins that are similar to the N-terminal domain of human Sufu., Das D, Finn RD, Abdubek P, Astakhova T, Axelrod HL, Bakolitsa C, Cai X, Carlton D, Chen C, Chiu HJ, Chiu M, Clayton T, Deller MC, Duan L, Ellrott K, Farr CL, Feuerhelm J, Grant JC, Grzechnik A, Han GW, Jaroszewski L, Jin KK, Klock HE, Knuth MW, Kozbial P, Krishna SS, Kumar A, Lam WW, Marciano D, Miller MD, Morse AT, Nigoghossian E, Nopakun A, Okach L, Puckett C, Reyes R, Tien HJ, Trame CB, van den Bedem H, Weekes D, Wooten T, Xu Q, Yeh A, Zhou J, Hodgson KO, Wooley J, Elsliger MA, Deacon AM, Godzik A, Lesley SA, Wilson IA, Protein Sci. 2010 Nov;19(11):2131-40. PMID:20836087
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (83 Kb) [Save to disk]
  • Biological Unit Coordinates (3k5j.pdb1.gz) 78 Kb
  • LPC: Ligand-Protein Contacts for 3K5J
  • CSU: Contacts of Structural Units for 3K5J
  • Structure Factors (4875 Kb)
  • Retrieve 3K5J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3K5J from S2C, [Save to disk]
  • Re-refined 3k5j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3K5J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3K5J
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3K5J, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3k5j] [3k5j_A]
  • SWISS-PROT database: [Q5F6Z8]
  • Domain organization of [Q5F6Z8_NEIG1] by SWISSPFAM
    • Other resources with information on 3K5J
  • Community annotation for 3K5J at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science