3KAV Structural Genomics, Unknown Function date Oct 19, 2009
title Crystal Structure Of The Mutant (L80m) Pa2107 Protein From P Aeruginosa, Northeast Structural Genomics Consortium Target
authors F.Forouhar, H.Neely, J.Seetharaman, S.Sahdev, R.Xiao, C.Ciccosant E.L.Foote, L.Zhao, J.K.Everett, R.Nair, T.B.Acton, B.Rost, G.T.Mo L.Tong, J.F.Hunt, Northeast Structural Genomics Consortium (N
compound source
Molecule: Uncharacterized Protein Pa2107
Chain: A, B, C, D
Engineered: Yes
Mutation: Yes
 Organism_scientific: Pseudomonas Aeruginosa
Organism_taxid: 287
Strain: Pao1
Gene: Pa2107
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)+ Magic
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21
symmetry Space Group: C 1 2 1
R_factor 0.205 R_Free 0.266
crystal
cell
length a length b length c angle alpha angle beta angle gamma
148.097 46.549 87.527 90.00 122.16 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand MSE enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (69 Kb) [Save to disk]
  • Biological Unit Coordinates (3kav.pdb1.gz) 32 Kb
  • Biological Unit Coordinates (3kav.pdb2.gz) 32 Kb
  • LPC: Ligand-Protein Contacts for 3KAV
  • CSU: Contacts of Structural Units for 3KAV
  • Structure Factors (469 Kb)
  • Retrieve 3KAV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3KAV from S2C, [Save to disk]
  • Re-refined 3kav structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3KAV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3KAV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3KAV, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3kav_D] [3kav_C] [3kav_A] [3kav_B] [3kav]
  • SWISS-PROT database: [Q9I208]
  • Domain organization of [Q9I208_PSEAE] by SWISSPFAM
    • Other resources with information on 3KAV
  • Community annotation for 3KAV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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