3KBG Ribosomal Protein date Oct 20, 2009
title Crystal Structure Of The 30s Ribosomal Protein S4e From Ther Acidophilum. Northeast Structural Genomics Consortium Targe
authors S.M.Vorobiev, M.Su, J.Seetharaman, R.L.Belote, C.Ciccosanti, D.Pa J.Liu, B.Rost, T.B.Acton, R.Xiao, J.K.Everett, G.T.Montelione, L. J.F.Hunt, Northeast Structural Genomics Consortium (Nesg)
compound source
Molecule: 30s Ribosomal Protein S4e
Chain: A
Engineered: Yes
Mutation: Yes
 Organism_scientific: Thermoplasma Acidophilum
Organism_taxid: 2303
Gene: Rps4e, Ta1259
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)+Magic
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet 21-23c
symmetry Space Group: P 32 2 1
R_factor 0.184 R_Free 0.217
crystal
cell
length a length b length c angle alpha angle beta angle gamma
74.831 74.831 64.133 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.75 Å
ligand MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (70 Kb) [Save to disk]
  • Biological Unit Coordinates (3kbg.pdb1.gz) 63 Kb
  • Biological Unit Coordinates (3kbg.pdb2.gz) 125 Kb
  • LPC: Ligand-Protein Contacts for 3KBG
  • CSU: Contacts of Structural Units for 3KBG
  • Structure Factors (834 Kb)
  • Retrieve 3KBG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3KBG from S2C, [Save to disk]
  • Re-refined 3kbg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3KBG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3KBG
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3KBG, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3kbg] [3kbg_A]
  • SWISS-PROT database: [Q56230]
  • Domain organization of [RS4E_THEAC] by SWISSPFAM
  • Domain found in 3KBG: [S4 ] by SMART
    • Other resources with information on 3KBG
  • Community annotation for 3KBG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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