4V7J Ribosome date 9-1 20, 2000
authors C.Neubauer, Y.G.Gao, K.R.Andersen, C.M.Dunham, A.C.Kelley, J.Hentschel, K.Gerdes, V.Ramakrishnan, D.E.Brodersen
compound source
symmetry Space Group: P 21 21 21
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
211.571 451.963 622.438 90.00 90.00 90.00
method X-Ray Diffractionresolution
note 4V7J supersedes 3KIQ, 3KIR, 3KIS, 3KIT
Gene
Ontology
ChainFunctionProcessComponent
A2, B2


A8, B8


AC, BC


AD, BD


AG, BG


AH, BH


AJ, BJ


AO, BO


AR, BR


AT, BT


AU, BU


AV, BV


AY, BY


AZ, BZ


Ab, Bb


Ac, Bc


Ae, Be


Ag, Bg


Ah, Bh


Ak, Bk


Al, Bl


Am, Bm


At, Bt


Ay, By
  • bacterial-type RNA polymeras...
  • nuclease activity
  • endonuclease activity
  • endoribonuclease activity


  • B0, A0


    B1, A1


    B3, A3


    B4, A4


    B5, A5


    B6, A6


    B7, A7


    B9, A9


    BE, AE


    BF, AF


    BI, AI


    BN, AN


    BP, AP


    BQ, AQ


    BS, AS


    BW, AW


    BX, AX


    Bd, Ad


    Bf, Af


    Bi, Ai


    Bj, Aj


    Bn, An


    Bo, Ao


    Bp, Ap


    Bq, Aq


    Br, Ar


    Bs, As


    Bu, Au


    Primary referenceThe structural basis for mRNA recognition and cleavage by the ribosome-dependent endonuclease RelE., Neubauer C, Gao YG, Andersen KR, Dunham CM, Kelley AC, Hentschel J, Gerdes K, Ramakrishnan V, Brodersen DE, Cell. 2009 Dec 11;139(6):1084-95. PMID:20005802
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1665 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 4V7J
  • Structure Factors (7009 Kb)
  • Retrieve 4V7J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4V7J from S2C, [Save to disk]
  • View 4V7J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4V7J
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4v7j_Bh] [4v7j_Ai] [4v7j_B9] [4v7j_Bv] [4v7j_BO] [4v7j_A8] [4v7j_As] [4v7j_Bo] [4v7j_AB] [4v7j_Au] [4v7j_BZ] [4v7j_Aw] [4v7j_BF] [4v7j_AH] [4v7j_A6] [4v7j_BJ] [4v7j] [4v7j_BA] [4v7j_BH] [4v7j_BD] [4v7j_By] [4v7j_Bp] [4v7j_B8] [4v7j_Br] [4v7j_BQ] [4v7j_AQ] [4v7j_Aj] [4v7j_An] [4v7j_A9] [4v7j_B1] [4v7j_A4] [4v7j_BW] [4v7j_Ak] [4v7j_BX] [4v7j_B2] [4v7j_Ac] [4v7j_Ad] [4v7j_B4] [4v7j_BT] [4v7j_AT] [4v7j_Bm] [4v7j_AD] [4v7j_Bk] [4v7j_B5] [4v7j_B6] [4v7j_AX] [4v7j_Ay] [4v7j_AG] [4v7j_Ar] [4v7j_Av] [4v7j_BB] [4v7j_AS] [4v7j_AV] [4v7j_Ae] [4v7j_AR] [4v7j_BC] [4v7j_AN] [4v7j_B7] [4v7j_AJ] [4v7j_AU] [4v7j_AC] [4v7j_Bj] [4v7j_Bt] [4v7j_Aa] [4v7j_A5] [4v7j_BY] [4v7j_Ap] [4v7j_AW] [4v7j_A3] [4v7j_A0] [4v7j_AO] [4v7j_Be] [4v7j_Aq] [4v7j_Bw] [4v7j_AA] [4v7j_BN] [4v7j_AY] [4v7j_Bi] [4v7j_Bn] [4v7j_Bu] [4v7j_Am] [4v7j_B3] [4v7j_Bc] [4v7j_AI] [4v7j_AF] [4v7j_BV] [4v7j_A7] [4v7j_Ba] [4v7j_Bd] [4v7j_BS] [4v7j_Bs] [4v7j_AE] [4v7j_BP] [4v7j_Bl] [4v7j_Bb] [4v7j_Ax] [4v7j_Ah] [4v7j_BU] [4v7j_Bf] [4v7j_BR] [4v7j_BI] [4v7j_Bg] [4v7j_BG] [4v7j_Ao] [4v7j_AP] [4v7j_AZ] [4v7j_BE] [4v7j_B0] [4v7j_Bx] [4v7j_Al] [4v7j_Bq] [4v7j_Af] [4v7j_A2] [4v7j_A1] [4v7j_Ab] [4v7j_At] [4v7j_Ag]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4V7J: [KH] [KOW] [Ribosomal_L14] [Ribosomal_L2] [Ribosomal_L2_C] [Ribosomal_S10] [Ribosomal_S15] [Ribosomal_S4] [S4 ] by SMART
  • Other resources with information on 4V7J
  • Community annotation for 4V7J at PDBWiki (http://pdbwiki.org)

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