3KJ4	Immune System	date	Nov 02, 2009
title	Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist Antib
authors	L.F.Silvian
compound		source
Molecule: Fab Fragment 1d9 Light Chain Chain: L, B Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Expression_system: Hybridoma Cells
Molecule: Fab Fragment 1d9 Heavy Chain Chain: H, C Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Expression_system: Hybridoma Cells
Molecule: Reticulon-4 Receptor Chain: A, D Fragment: Unp Residues 27-312 Synonym: Nogo Receptor, Ngr, Nogo-66 Receptor Engineered: Yes		Organism_scientific: Rattus Norvegicus Organism_common: Rat Organism_taxid: 10116 Gene: Nogo Receptor, Nogor, Rtn4r Expression_system: Cho
symmetry	Space Group: P 21 21 2	R_factor 0.253 R_Free 0.318
crystal cell	length a length b length c angle alpha angle beta angle gamma 188.664 125.488 90.575 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.10 Å
ligand	MAN, NAG, NDG, ZN	enzyme
Primary reference	Resolution of disulfide heterogeneity in Nogo receptor 1 fusion proteins by molecular engineering., Weinreb PH, Wen D, Qian F, Wildes CP, Garber EA, Walus L, Jung MY, Wang J, Relton JK, Amatucci J, Wang R, Porreca F, Silvian L, Meier W, Pepinsky RB, Lee DH, Biotechnol Appl Biochem. 2010 Sep 3. PMID:20815818

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (228 Kb) [Save to disk] Biological Unit Coordinates (3kj4.pdb1.gz) 110 Kb Biological Unit Coordinates (3kj4.pdb2.gz) 111 Kb LPC: Ligand-Protein Contacts for 3KJ4 CSU: Contacts of Structural Units for 3KJ4 Structure Factors (634 Kb) Retrieve 3KJ4 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3KJ4 from S2C, [Save to disk] Re-refined 3kj4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3KJ4 in 3D

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Visual 3D analysis of 3KJ4

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3KJ4, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3kj4_H] [3kj4_A] [3kj4_C] [3kj4] [3kj4_L] [3kj4_D] [3kj4_B] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 3KJ4: [IG_like] [IGv] [LRR] [LRRCT] [LRRNT] [LRR_TYP ] by SMART

Other resources with information on 3KJ4

Community annotation for 3KJ4 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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