3KTJ	Hydrolase Antibiotic	date	Nov 25, 2009
title	Structure Of Clpp In Complex With Adep2 In Monoclinic Crysta
authors	B.G.Lee, H.Brotz-Oesterhelt, H.K.Song
compound		source
Molecule: Atp-Dependent Clp Protease Proteolytic Subunit Chain: A, B, C, D, E, F, G Synonym: Endopeptidase Clp, Caseinolytic Protease, Stress P Ec: 3.4.21.92 Engineered: Yes		Organism_scientific: Bacillus Subtilis Organism_taxid: 1423 Gene: Clpp, Yvdn, Bsu34540 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet26
Molecule: Acyldepsipeptide 2 Chain: H, I, J, K, L, M, N Synonym: Adep2 Engineered: Yes		Synthetic: Yes Other_details: Designed Peptide Based On Adep1
symmetry	Space Group: C 1 2 1	R_factor 0.226 R_Free 0.296
crystal cell	length a length b length c angle alpha angle beta angle gamma 121.426 152.244 100.376 90.00 118.98 90.00
method	X-Ray Diffraction	resolution	2.60 Å
ligand	CXP, MP8, NHE, WFP, YCP	enzyme	Hydrolase E.C.3.4.21.92 BRENDA
Gene Ontology	Chain Function Process Component F, A, D, C, G, E, B
Primary reference	Structures of ClpP in complex with acyldepsipeptide antibiotics reveal its activation mechanism., Lee BG, Park EY, Lee KE, Jeon H, Sung KH, Paulsen H, Rubsamen-Schaeff H, Brotz-Oesterhelt H, Song HK, Nat Struct Mol Biol. 2010 Apr;17(4):471-8. Epub 2010 Mar 21. PMID:20305655

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (215 Kb) [Save to disk] Biological Unit Coordinates (3ktj.pdb1.gz) 205 Kb LPC: Ligand-Protein Contacts for 3KTJ CSU: Contacts of Structural Units for 3KTJ Structure Factors (1050 Kb) Retrieve 3KTJ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3KTJ from S2C, [Save to disk] Re-refined 3ktj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3KTJ in 3D

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Visual 3D analysis of 3KTJ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3KTJ, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3ktj_M] [3ktj_I] [3ktj_C] [3ktj] [3ktj_E] [3ktj_H] [3ktj_N] [3ktj_G] [3ktj_K] [3ktj_A] [3ktj_L] [3ktj_F] [3ktj_J] [3ktj_B] [3ktj_D] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3KTJ

Community annotation for 3KTJ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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