3L49 Transport Protein date Dec 18, 2009
title Crystal Structure Of Abc Sugar Transporter Subunit From Rhod Sphaeroides 2.4.1
authors Y.Patskovsky, S.Ozyurt, M.Dickey, J.Do, S.R.Wasserman, J.M.Sauder S.K.Burley, S.C.Almo, New York Structural Genomix Research Co (Nysgxrc), New York Sgx Research Center For Structural Genom (Nysgxrc)
compound source
Molecule: Abc Sugar (Ribose) Transporter, Periplasmic Subst Binding Subunit;
Chain: A, B, C, D
Synonym: Periplasmic Sugar Binding Protein
Engineered: Yes
 Organism_scientific: Rhodobacter Sphaeroides
Organism_taxid: 272943
Strain: Atcc 17023 2.4.1 Ncib 8253 Dsm 158
Gene: Rhos4_09560, Rsp_2365
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor 0.193 R_Free 0.254
crystal
cell
length a length b length c angle alpha angle beta angle gamma
67.310 75.712 77.438 106.41 115.49 96.71
method X-Ray Diffractionresolution 2.30 Å
ligand UNL enzyme
Gene RHOS4 ; RSP
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (184 Kb) [Save to disk]
  • Biological Unit Coordinates (3l49.pdb1.gz) 46 Kb
  • Biological Unit Coordinates (3l49.pdb2.gz) 46 Kb
  • Biological Unit Coordinates (3l49.pdb3.gz) 46 Kb
  • Biological Unit Coordinates (3l49.pdb4.gz) 46 Kb
  • Biological Unit Coordinates (3l49.pdb5.gz) 89 Kb
  • Biological Unit Coordinates (3l49.pdb6.gz) 89 Kb
  • LPC: Ligand-Protein Contacts for 3L49
  • CSU: Contacts of Structural Units for 3L49
  • Structure Factors (1196 Kb)
  • Retrieve 3L49 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3L49 from S2C, [Save to disk]
  • Re-refined 3l49 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3L49 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3L49
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3L49, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3l49] [3l49_C] [3l49_A] [3l49_B] [3l49_D]
  • SWISS-PROT database: [Q3J3W0]
  • Domain organization of [Q3J3W0_RHOS4] by SWISSPFAM
    • Other resources with information on 3L49
  • Community annotation for 3L49 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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