3L6U Transport Protein date Dec 25, 2009
title Crystal Structure Of Abc-Type Sugar Transport System, Peripl Component From Exiguobacterium Sibiricum
authors A.A.Fedorov, E.V.Fedorov, R.Toro, J.M.Sauder, S.K.Burley, S.C.Alm York Sgx Research Center For Structural Genomics (Nysgxrc)
compound source
Molecule: Abc-Type Sugar Transport System Periplasmic Compo
Chain: A, B
Synonym: Periplasmic Binding Proteinlaci Transcriptional R
Engineered: Yes
 Organism_scientific: Exiguobacterium Sibiricum
Organism_taxid: 262543
Strain: Dsm 17290 Jcm 13490 255-15
Gene: Exig_0838
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.235 R_Free 0.269
crystal
cell
length a length b length c angle alpha angle beta angle gamma
66.932 57.309 73.131 90.00 106.70 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand MSE, SO4 enzyme
Gene EXIG
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (93 Kb) [Save to disk]
  • Biological Unit Coordinates (3l6u.pdb1.gz) 86 Kb
  • LPC: Ligand-Protein Contacts for 3L6U
  • CSU: Contacts of Structural Units for 3L6U
  • Structure Factors (330 Kb)
  • Retrieve 3L6U in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3L6U from S2C, [Save to disk]
  • Re-refined 3l6u structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3L6U in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3L6U
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3L6U, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3l6u_B] [3l6u] [3l6u_A]
  • SWISS-PROT database: [B1YL86]
  • Domain organization of [B1YL86_EXIS2] by SWISSPFAM
    • Other resources with information on 3L6U
  • Community annotation for 3L6U at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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