3L92 Transferase date Jan 04, 2010
title Phosphopantetheine Adenylyltransferase From Yersinia Pestis With Coenzyme A.
authors J.Osipiuk, N.Maltseva, M.Makowska-Grzyska, K.Kwon, W.F.Anderson, A.Joachimiak, Center For Structural Genomics Of Infectious D (Csgid)
compound source
Molecule: Phosphopantetheine Adenylyltransferase
Chain: A
Synonym: Pantetheine-Phosphate Adenylyltransferase, Ppat, D Coa Pyrophosphorylase;
Ec: 2.7.7.3
Engineered: Yes
Organism_scientific: Yersinia Pestis
Organism_taxid: 214092
Strain: Co92
Gene: Coad, Kdtb, Y0088, Ypo0053, Yp_0054
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg7
symmetry Space Group: H 3 2
R_factor 0.164 R_Free 0.192
crystal
cell
length a length b length c angle alpha angle beta angle gamma
114.820 114.820 119.074 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.89 Å
ligand COA enzyme Transferase E.C.2.7.7.3 BRENDA
Gene YP
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (38 Kb) [Save to disk]
  • Biological Unit Coordinates (3l92.pdb1.gz) 189 Kb
  • Biological Unit Coordinates (3l92.pdb2.gz) 95 Kb
  • Biological Unit Coordinates (3l92.pdb3.gz) 64 Kb
  • LPC: Ligand-Protein Contacts for 3L92
  • CSU: Contacts of Structural Units for 3L92
  • Structure Factors (507 Kb)
  • Retrieve 3L92 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3L92 from S2C, [Save to disk]
  • Re-refined 3l92 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3L92 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3L92
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3L92, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3l92] [3l92_A]
  • SWISS-PROT database: [Q8ZJN9]
  • Domain organization of [COAD_YERPE] by SWISSPFAM
  • Other resources with information on 3L92
  • Community annotation for 3L92 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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