3LB9 Hydrolase date Jan 08, 2010
title Crystal Structure Of The B. Circulans Cpa123 Circular Permut
authors I.D'Angelo, S.Reitinger, M.Ludwiczek, N.Strynadka, S.G.Withers, L.P.Mcintosh
compound source
Molecule: Endo-1,4-Beta-Xylanase
Chain: A, B, C
Fragment: Residues 65-182 And 2-63
Synonym: Xylanase, 1,4-Beta-D-Xylan Xylanohydrolase
Ec: 3.2.1.8
Engineered: Yes
Organism_scientific: Bacillus Circulans
Organism_taxid: 1397
Gene: Xlna
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21( De3)
symmetry Space Group: C 1 2 1
R_factor 0.192 R_Free 0.268
crystal
cell
length a length b length c angle alpha angle beta angle gamma
69.810 114.970 65.030 90.00 113.47 90.00
method X-Ray Diffractionresolution 3.00 Å
ligand
enzyme Hydrolase E.C.3.2.1.8 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceCircular permutation of Bacillus circulans xylanase: a kinetic and structural study., Reitinger S, Yu Y, Wicki J, Ludwiczek M, D'Angelo I, Baturin S, Okon M, Strynadka NC, Lutz S, Withers SG, McIntosh LP, Biochemistry. 2010 Mar 23;49(11):2464-74. PMID:20163191
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (88 Kb) [Save to disk]
  • Biological Unit Coordinates (3lb9.pdb1.gz) 29 Kb
  • Biological Unit Coordinates (3lb9.pdb2.gz) 29 Kb
  • Biological Unit Coordinates (3lb9.pdb3.gz) 57 Kb
  • CSU: Contacts of Structural Units for 3LB9
  • Structure Factors (153 Kb)
  • Retrieve 3LB9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3LB9 from S2C, [Save to disk]
  • Re-refined 3lb9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3LB9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3LB9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3LB9, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3lb9_C] [3lb9] [3lb9_B] [3lb9_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3LB9
  • Community annotation for 3LB9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science