3LJ3 Transferase date Jan 25, 2010
title Pi3-Kinase-Gamma With A Pyrrolopyridine-Benzofuran Inhibitor
authors J.Bard, K.Svenson
compound source
Molecule: Phosphatidylinositol-4,5-Bisphosphate 3-Kinase Ca Subunit Gamma Isoform;
Chain: A
Fragment: Unp Residues 144-1102
Synonym: Pi3-Kinase P110 Subunit Gamma, Ptdins-3-Kinase Sub Pi3kgamma, Pi3k, P120-Pi3k;
Ec: 2.7.1.153
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pik3cg
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
symmetry Space Group: C 1 2 1
R_factor 0.222 R_Free 0.261
crystal
cell
length a length b length c angle alpha angle beta angle gamma
145.071 68.509 106.692 90.00 94.64 90.00
method X-Ray Diffractionresolution 2.43 Å
ligand SO4, WYE enzyme Transferase E.C.2.7.1.153 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDiscovery and optimization of 2-(4-substituted-pyrrolo[2,3-b]pyridin-3-yl)methylene-4-hydroxybenzofuran- 3(2H)-ones as potent and selective ATP-competitive inhibitors of the mammalian target of rapamycin (mTOR)., Tsou HR, MacEwan G, Birnberg G, Grosu G, Bursavich MG, Bard J, Brooijmans N, Toral-Barza L, Hollander I, Mansour TS, Ayral-Kaloustian S, Yu K, Bioorg Med Chem Lett. 2010 Apr 1;20(7):2321-5. Epub 2010 Feb 2. PMID:20188552
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (138 Kb) [Save to disk]
  • Biological Unit Coordinates (3lj3.pdb1.gz) 132 Kb
  • LPC: Ligand-Protein Contacts for 3LJ3
  • CSU: Contacts of Structural Units for 3LJ3
  • Structure Factors (618 Kb)
  • Retrieve 3LJ3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3LJ3 from S2C, [Save to disk]
  • Re-refined 3lj3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3LJ3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3LJ3
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3LJ3, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3lj3_A] [3lj3]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3LJ3: [PI3K_C2] [PI3K_rbd] [PI3Ka] [PI3Kc ] by SMART
  • Other resources with information on 3LJ3
  • Community annotation for 3LJ3 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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