3LWE Cell Cycle date Feb 23, 2010
title The Crystal Structure Of Mpp8
authors Z.Li, Z.Li, J.Ruan, C.Xu, Y.Tong, P.W.Pan, W.Tempel, L.Crombet, J.Mi Structural Genomics Consortium (Sgc)
compound source
Molecule: M-Phase Phosphoprotein 8
Chain: A, B
Synonym: Two Hybrid-Associated Protein 3 With Ranbpm, Twa3
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mphosph8, Mpp8
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)_v2r
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a-Mhl
symmetry Space Group: P 65
R_factor 0.217 R_Free 0.283
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.665 50.665 123.538 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.05 Å
Primary referenceStructural basis for specific binding of human MPP8 chromodomain to histone H3 methylated at lysine 9., Li J, Li Z, Ruan J, Xu C, Tong Y, Pan PW, Tempel W, Crombet L, Min J, Zang J, PLoS One. 2011;6(10):e25104. Epub 2011 Oct 12. PMID:22022377
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (26 Kb) [Save to disk]
  • Biological Unit Coordinates (3lwe.pdb1.gz) 11 Kb
  • Biological Unit Coordinates (3lwe.pdb2.gz) 11 Kb
  • Biological Unit Coordinates (3lwe.pdb3.gz) 22 Kb
  • Biological Unit Coordinates (3lwe.pdb4.gz) 22 Kb
  • CSU: Contacts of Structural Units for 3LWE
  • Structure Factors (289 Kb)
  • Retrieve 3LWE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3LWE from S2C, [Save to disk]
  • Re-refined 3lwe structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3LWE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3LWE
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3LWE, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3lwe_B] [3lwe_A] [3lwe]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3LWE: [CHROMO ] by SMART
    • Other resources with information on 3LWE
  • Community annotation for 3LWE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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