3M7F	Signaling Protein Ligase	date	Mar 16, 2010
title	Crystal Structure Of The Nedd4 C2grb10 Sh2 Complex
authors	Q.Huang, M.Szebenyi
compound		source
Molecule: Growth Factor Receptor-Bound Protein 10 Chain: A Fragment: Unp Residues 514-621, Sh2 Domain Synonym: Grb10 Adapter Protein, Maternally Expressed Gene 1 Ec: 6.3.2.- Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Gene: Grb10, Kiaa0093, Meg1, Nedd-4, Nedd4, Nedd4a Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Psumo
Molecule: E3 Ubiquitin-Protein Ligase Nedd4 Chain: B Fragment: Unp Residues 71-246, C2 Domain Synonym: Neural Precursor Cell Expressed Developmentally Do Regulated Protein 4, Nedd-4; Ec: 6.3.2.- Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Gene: Grb10, Kiaa0093, Meg1, Nedd-4, Nedd4, Nedd4a Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Pqe80
symmetry	Space Group: P 21 21 21	R_factor 0.193 R_Free 0.232
crystal cell	length a length b length c angle alpha angle beta angle gamma 52.163 70.086 86.246 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand		enzyme	Ligase E.C.6.3.2 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Structural basis for the interaction between the growth factor-binding protein GRB10 and the E3 ubiquitin ligase NEDD4., Huang Q, Szebenyi DM, J Biol Chem. 2010 Dec 31;285(53):42130-9. Epub 2010 Oct 26. PMID:20980250

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (89 Kb) [Save to disk] Biological Unit Coordinates (3m7f.pdb1.gz) 84 Kb CSU: Contacts of Structural Units for 3M7F Structure Factors (292 Kb) Retrieve 3M7F in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3M7F from S2C, [Save to disk] Re-refined 3m7f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3M7F in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3M7F

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Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3M7F, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3m7f] [3m7f_A] [3m7f_B] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 3M7F: [C2] [SH2 ] by SMART

Other resources with information on 3M7F

Community annotation for 3M7F at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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