3MB8 Crystal structure of purine nucleoside phosphorylase from toxoplasma gondii in complex with immucillin-H date
authors Ho, M., Almo, S.C., Schramm, V.L.
compound source
symmetry
R_factor
R_Free 0.243
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.90
ligand GOL, IMH, PO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceINHIBITION AND STRUCTURE OF TOXOPLASMA GONDII PURINE NUCLEOSIDE PHOSPHORYLASE., Donaldson TM, Cassera MB, Ho MC, Zhan C, Merino EF, Evans GB, Tyler PC, Almo SC, Schramm VL, Kim K, Eukaryot Cell. 2014 Feb 28. PMID:24585883
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (88 Kb) [Save to disk]
  • Biological Unit Coordinates (3mb8.pdb1.gz) 243 Kb
  • LPC: Ligand-Protein Contacts for 3MB8
  • CSU: Contacts of Structural Units for 3MB8
  • Structure Factors (933 Kb)
  • Retrieve 3MB8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3MB8 from S2C, [Save to disk]
  • Re-refined 3mb8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3MB8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3MB8
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3MB8, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3mb8] [3mb8_A] [3mb8_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3MB8
  • Community annotation for 3MB8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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