3MBL Transferase date Mar 25, 2010
title Crystal Structure Of The Human Mitogen-Activated Protein Kin (Mek 1) In Complex With Ligand And Mgadp
authors D.R.Dougan, C.D.Mol
compound source
Molecule: Dual Specificity Mitogen-Activated Protein Kinase
Chain: A
Fragment: Kinase Domain
Synonym: Map Kinase Kinase 1, Mapkk 1, Erk Activator Kinase Mapkerk Kinase 1, Mek 1;
Ec: 2.7.12.2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Map2k1, Mek 1, Mek1, Prkmk1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21
symmetry Space Group: P 62
R_factor 0.166 R_Free 0.215
crystal
cell
length a length b length c angle alpha angle beta angle gamma
81.982 81.982 129.928 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.60 Å
ligand ADP, LSG, MG BindingDB enzyme Transferase E.C.2.7.12.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure-based design and synthesis of pyrrole derivatives as MEK inhibitors., Wallace MB, Adams ME, Kanouni T, Mol CD, Dougan DR, Feher VA, O'Connell SM, Shi L, Halkowycz P, Dong Q, Bioorg Med Chem Lett. 2010 Jul 15;20(14):4156-8. Epub 2010 May 20. PMID:20621728
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (106 Kb) [Save to disk]
  • Biological Unit Coordinates (3mbl.pdb1.gz) 198 Kb
  • Biological Unit Coordinates (3mbl.pdb2.gz) 100 Kb
  • LPC: Ligand-Protein Contacts for 3MBL
  • CSU: Contacts of Structural Units for 3MBL
  • Structure Factors (223 Kb)
  • Retrieve 3MBL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3MBL from S2C, [Save to disk]
  • Re-refined 3mbl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3MBL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3MBL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3MBL, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3mbl_A] [3mbl]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3MBL: [S_TKc ] by SMART
  • Other resources with information on 3MBL
  • Community annotation for 3MBL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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