3MBX Immune System date Mar 26, 2010
title Crystal Structure Of Chimeric Antibody X836
authors A.Teplyakov, G.Obmolova, G.L.Gilliland
compound source
Molecule: X836 Light Chain
Chain: L
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell: Human Embryonic Kidney (Hek) 293 Ce

Molecule: X836 Heavy Chain
Chain: H
Fragment: Chimeric Molecule Of Mouse Variable Domain And Hu Constant Domain, Fd Fragment;
Engineered: Yes

Organism_scientific: Mus Musculus, Homo Sapiens
Organism_common: Mouse, Human
Organism_taxid: 10090,9606
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell: Human Embryonic Kidney (Hek) 293 Ce
symmetry Space Group: I 2 2 2
R_factor 0.210 R_Free 0.232
crystal
cell
length a length b length c angle alpha angle beta angle gamma
86.930 99.840 125.330 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand NA, PCA, PO4 enzyme
Primary referenceOn the domain pairing in chimeric antibodies., Teplyakov A, Obmolova G, Carton JM, Gao W, Zhao Y, Gilliland GL, Mol Immunol. 2010 May 27. PMID:20554002
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (82 Kb) [Save to disk]
  • Biological Unit Coordinates (3mbx.pdb1.gz) 77 Kb
  • LPC: Ligand-Protein Contacts for 3MBX
  • CSU: Contacts of Structural Units for 3MBX
  • Structure Factors (516 Kb)
  • Retrieve 3MBX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3MBX from S2C, [Save to disk]
  • Re-refined 3mbx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3MBX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3MBX
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3MBX, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3mbx_H] [3mbx_L] [3mbx]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3MBX: [IG_like] [IGv ] by SMART
  • Other resources with information on 3MBX
  • Community annotation for 3MBX at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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