3ML3 Protein Transport date Apr 16, 2010
title Crystal Structure Of The Icsa Autochaperone Region
authors D.Diezmann, K.Kuhnel
compound source
Molecule: Outer Membrane Protein Icsa Autotransporter
Chain: A
Fragment: Icsa Autochaperone Region, Unp Residues 591-758
Synonym: Outer Membrane Protein Icsa, Outer Membrane Protei Translocator;
Engineered: Yes
Organism_scientific: Shigella Flexneri
Organism_taxid: 623
Gene: Cp0182, Icsa, Virg
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: P 62
R_factor 0.196 R_Free 0.219
crystal
cell
length a length b length c angle alpha angle beta angle gamma
104.220 104.220 61.580 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.00 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal Structure of the Autochaperone Region from the Shigella flexneri Autotransporter IcsA., Kuhnel K, Diezmann D, J Bacteriol. 2011 Apr;193(8):2042-5. Epub 2011 Feb 18. PMID:21335457
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (30 Kb) [Save to disk]
  • Biological Unit Coordinates (3ml3.pdb1.gz) 25 Kb
  • CSU: Contacts of Structural Units for 3ML3
  • Structure Factors (372 Kb)
  • Retrieve 3ML3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ML3 from S2C, [Save to disk]
  • Re-refined 3ml3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3ML3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3ML3
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3ML3, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ml3_A] [3ml3]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3ML3
  • Community annotation for 3ML3 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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