3MPZ	Hydrolase	date	Apr 27, 2010
title	Crystal Structure Of Cytidine Deaminase From Mycobacterium S
authors	Seattle Structural Genomics Center For Infectious Disease (S
compound		source
Molecule: Cytidine Deaminase Chain: A, B, C, D Ec: 3.5.4.5 Engineered: Yes		Organism_scientific: Mycobacterium Smegmatis Organism_taxid: 246196 Strain: Atcc 700084 Mc(2)155 Gene: Cdd, Msmeg_1673 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Ava0421
symmetry	Space Group: C 2 2 21	R_factor 0.156 R_Free 0.192
crystal cell	length a length b length c angle alpha angle beta angle gamma 54.280 96.110 178.190 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.70 Å
ligand	ZN	enzyme	Hydrolase E.C.3.5.4.5 BRENDA
Gene	MSMEG
Gene Ontology	Chain Function Process Component A, D, C, B cytidine deaminase activity
Primary reference	Increasing the structural coverage of tuberculosis drug targets., Baugh L, Phan I, Begley DW, Clifton MC, Armour B, Dranow DM, Taylor BM, Muruthi MM, Abendroth J, Fairman JW, Fox D 3rd, Dieterich SH, Staker BL, Gardberg AS, Choi R, Hewitt SN, Napuli AJ, Myers J, Barrett LK, Zhang Y, Ferrell M, Mundt E, Thompkins K, Tran N, Lyons-Abbott S, Abramov A, Sekar A, Serbzhinskiy D, Lorimer D, Buchko GW, Stacy R, Stewart LJ, Edwards TE, Van Voorhis WC, Myler PJ, Tuberculosis (Edinb). 2014 Dec 19. pii: S1472-9792(14)20565-8. doi:, 10.1016/j.tube.2014.12.003. PMID:25613812

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (161 Kb) [Save to disk] Biological Unit Coordinates (3mpz.pdb1.gz) 155 Kb LPC: Ligand-Protein Contacts for 3MPZ CSU: Contacts of Structural Units for 3MPZ Structure Factors (763 Kb) Retrieve 3MPZ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3MPZ from S2C, [Save to disk] Re-refined 3mpz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3MPZ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3MPZ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3MPZ, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3mpz_A] [3mpz_C] [3mpz_D] [3mpz] [3mpz_B] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3MPZ

Community annotation for 3MPZ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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