3MQP Apoptosis date Apr 28, 2010
title Crystal Structure Of Human Bfl-1 In Complex With Noxa Bh3 Pe Northeast Structural Genomics Consortium Target Hr2930
authors R.Guan, R.Xiao, L.Zhao, T.B.Acton, C.Gelinas, G.T.Montelione, Nort Structural Genomics Consortium (Nesg)
compound source
Molecule: Bcl-2-Related Protein A1
Chain: A
Synonym: Bcl-2-Like Protein 5, Bcl2-L-5, Protein Bfl-1, Hem Specific Early Response Protein, Protein Grs;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bcl2a1, Bcl2l5, Bfl1, Grs, Hbpa1
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)+ Magic
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15

Molecule: Phorbol-12-Myristate-13-Acetate-Induced Protein 1
Chain: B
Fragment: Noxa Bh3 Peptide, Residues 19-43
Synonym: Pma-Induced Protein 1, Immediate-Early-Response Pr Protein Noxa;
Engineered: Yes
Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: This Sequence Occurs Naturally In Humans. Pe Synthesized From A Commercial Peptide Synthesis Service.
symmetry Space Group: P 1 21 1
R_factor 0.177 R_Free 0.230
crystal
cell
length a length b length c angle alpha angle beta angle gamma
43.138 43.196 46.387 90.00 113.50 90.00
method X-Ray Diffractionresolution 2.24 Å
note 3MQP is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (33 Kb) [Save to disk]
  • Biological Unit Coordinates (3mqp.pdb1.gz) 29 Kb
  • CSU: Contacts of Structural Units for 3MQP
  • Structure Factors (93 Kb)
  • Retrieve 3MQP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3MQP from S2C, [Save to disk]
  • Re-refined 3mqp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3MQP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3MQP
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3MQP, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3mqp] [3mqp_A] [3mqp_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3MQP: [BCL ] by SMART
    • Other resources with information on 3MQP
  • Community annotation for 3MQP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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