3N4U Unknown Function date May 22, 2010
title App Aph(2")-Iva Form II
authors C.A.Smith, M.Toth, H.Frase, S.B.Vakulenko
compound source
Molecule: Aph(2'')-Id
Chain: A
Engineered: Yes
 Organism_scientific: Enterococcus Casseliflavus
Organism_common: Enterococcus Flavescens
Organism_taxid: 37734
Gene: Aph(2'')-Id
symmetry Space Group: P 21 21 21
R_factor 0.178 R_Free 0.273
crystal
cell
length a length b length c angle alpha angle beta angle gamma
46.380 62.590 96.490 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure and kinetic mechanism of aminoglycoside phosphotransferase-2''-IVa., Toth M, Frase H, Antunes NT, Smith CA, Vakulenko SB, Protein Sci. 2010 Jun 15. PMID:20556826
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk]
  • Biological Unit Coordinates (3n4u.pdb1.gz) 55 Kb
  • CSU: Contacts of Structural Units for 3N4U
  • Structure Factors (132 Kb)
  • Retrieve 3N4U in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3N4U from S2C, [Save to disk]
  • Re-refined 3n4u structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3N4U in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3N4U
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3N4U, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3n4u_A] [3n4u]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3N4U
  • Community annotation for 3N4U at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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