3NAU Transcription date Jun 02, 2010
title Crystal Structure Of Zhx2 Hd2 (Zinc-Fingers And Homeoboxes P Homeodomain 2)
authors J.Ren, L.E.Bird, R.J.Owens, D.K.Stammers, Oxford Protein Product Facility (Oppf)
compound source
Molecule: Zinc Fingers And Homeoboxes Protein 2
Chain: A, B
Fragment: Hd2 Domain, Homeobox 2, Residues 444-501
Synonym: Zhx2, Zinc Finger And Homeodomain Protein 2, Alpha Fetoprotein Regulator 1, Afp Regulator 1, Regulator Of Afp;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Zhx2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: B834(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Oppf2273
symmetry Space Group: C 1 2 1
R_factor 0.203 R_Free 0.267
crystal
cell
length a length b length c angle alpha angle beta angle gamma
96.710 60.670 27.710 90.00 95.34 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceNovel structural features in two ZHX homeodomains derived from a systematic study of single and multiple domains., Bird LE, Ren J, Nettleship JE, Folkers GE, Owens RJ, Stammers DK, BMC Struct Biol. 2010 May 28;10:13. PMID:20509910
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (44 Kb) [Save to disk]
  • Biological Unit Coordinates (3nau.pdb1.gz) 39 Kb
  • LPC: Ligand-Protein Contacts for 3NAU
  • CSU: Contacts of Structural Units for 3NAU
  • Structure Factors (32 Kb)
  • Retrieve 3NAU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3NAU from S2C, [Save to disk]
  • Re-refined 3nau structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3NAU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3NAU
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3NAU, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3nau_A] [3nau_B] [3nau]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3NAU: [HOX ] by SMART
  • Other resources with information on 3NAU
  • Community annotation for 3NAU at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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