3NBN	Transcription Dna	date	Jun 03, 2010
title	Crystal Structure Of A Dimer Of Notch Transcription Complex Hes1 Dna
authors	K.L.Arnett, S.C.Blacklow
compound		source
Molecule: Recombining Binding Protein Suppressor Of Hairles Chain: A, D Fragment: Residues 23-448 Synonym: J Kappa-Recombination Signal-Binding Protein, Rbp- Rbp-Jk, Rbp-J, Cbf-1, Renal Carcinoma Antigen Ny-Ren-30; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Igkjrb, Igkjrb1, Rbpj, Rbpjk, Rbpsuh Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Rosetta II Plyss Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28a
Molecule: Neurogenic Locus Notch Homolog Protein 1 Chain: B, E Fragment: Residues 1872-2126 Synonym: Notch 1, Hn1, Translocation-Associated Notch Prote Notch 1 Extracellular Truncation, Notch 1 Intracellular Dom Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Notch1, Tan1 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3)Plyss Expression_system_vector_type: Plasmid Expression_system_plasmid: Pdest15
Molecule: Mastermind-Like Protein 1 Chain: C, F Fragment: Residues 13-74 Synonym: Mam-1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Kiaa0200, Maml1 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3)Plyss Expression_system_vector_type: Plasmid Expression_system_plasmid: Prset
Molecule: Dna, Hes1 Promoter Chain: X Engineered: Yes		Synthetic: Yes Other_details: Sequence From Mouse And Human Hes1 Promoter
Molecule: Dna, Hes1 Promoter Chain: Y Engineered: Yes		Synthetic: Yes Other_details: Sequence From Mouse And Human Hes1 Promoter
symmetry	Space Group: C 1 2 1	R_factor 0.254 R_Free 0.298
crystal cell	length a length b length c angle alpha angle beta angle gamma 295.112 108.059 87.239 90.00 102.52 90.00
method	X-Ray Diffraction	resolution	3.45 Å
Gene Ontology	Chain Function Process Component A, D F, C
Primary reference	Structural and mechanistic insights into cooperative assembly of dimeric Notch transcription complexes., Arnett KL, Hass M, McArthur DG, Ilagan MX, Aster JC, Kopan R, Blacklow SC, Nat Struct Mol Biol. 2010 Nov;17(11):1312-7. Epub 2010 Oct 24. PMID:20972443

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (246 Kb) [Save to disk] Biological Unit Coordinates (3nbn.pdb1.gz) 239 Kb CSU: Contacts of Structural Units for 3NBN Structure Factors (550 Kb) Retrieve 3NBN in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3NBN from S2C, [Save to disk] Re-refined 3nbn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3NBN in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3NBN

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3NBN, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3nbn] [3nbn_E] [3nbn_F] [3nbn_B] [3nbn_Y] [3nbn_A] [3nbn_X] [3nbn_D] [3nbn_C] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 3NBN: [ANK] [BTD] [LAG1_DNAbind] [MamL-1 ] by SMART

Other resources with information on 3NBN

Community annotation for 3NBN at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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