3NCX Cell Adhesion date Jun 06, 2010
title Crystal Structure Of Ehec O157:H7 Intimin Mutant
authors Y.Yi, F.Gao, G.F.Gao, Q.M.Zou
compound source
Molecule: Intimin Adherence Protein
Chain: A, B
Fragment: Residues 747-934
Synonym: Intimin
Engineered: Yes
Mutation: Yes
Organism_scientific: Escherichia Coli O157:H7
Organism_taxid: 544404
Strain: Ehec
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-21a
symmetry Space Group: P 21 21 21
R_factor 0.213 R_Free 0.268
crystal
cell
length a length b length c angle alpha angle beta angle gamma
43.771 92.488 100.048 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.60 Å
Primary referenceCrystal structure of EHEC intimin: insights into the complementarity between EPEC and EHEC., Yi Y, Ma Y, Gao F, Mao X, Peng H, Feng Y, Fan Z, Wang G, Guo G, Yan J, Zeng H, Zou Q, Gao GF, PLoS One. 2010 Dec 16;5(12):e15285. PMID:21179574
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (66 Kb) [Save to disk]
  • Biological Unit Coordinates (3ncx.pdb1.gz) 33 Kb
  • Biological Unit Coordinates (3ncx.pdb2.gz) 31 Kb
  • CSU: Contacts of Structural Units for 3NCX
  • Structure Factors (225 Kb)
  • Retrieve 3NCX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3NCX from S2C, [Save to disk]
  • Re-refined 3ncx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3NCX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3NCX
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3NCX, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ncx] [3ncx_B] [3ncx_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3NCX: [BID_2 ] by SMART
  • Other resources with information on 3NCX
  • Community annotation for 3NCX at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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