3NEW Transferase Transferase Inhibitor date Jun 09, 2010
title P38-Alpha Complexed With Compound 10
authors E.R.Goedken, K.M.Comess, C.Sun, M.Argiriadi, Y.Jia, C.M.Quinn, D.L D.Marcotte, D.Borhani
compound source
Molecule: Mitogen-Activated Protein Kinase 14
Chain: A
Synonym: Map Kinase 14, Mapk 14, Mitogen-Activated Protein Alpha, Map Kinase P38 Alpha, Cytokine Suppressive Anti-Infl Drug-Binding Protein, Csaid-Binding Protein, Csbp, Max-Inte Protein 2, Map Kinase Mxi2, Sapk2a;
Ec: 2.7.11.24
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Csbp, Csbp1, Csbp2, Cspb1, Mapk14, Mxi2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.214 R_Free 0.306
crystal
cell
length a length b length c angle alpha angle beta angle gamma
64.907 74.477 77.885 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.51 Å
ligand 3NE enzyme Transferase E.C.2.7.11.24 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDiscovery and Characterization of Non-ATP Site Inhibitors of the Mitogen Activated Protein (MAP) Kinases., Comess KM, Sun C, Abad-Zapatero C, Goedken ER, Gum RJ, Borhani DW, Argiriadi M, Groebe DR, Jia Y, Clampit JE, Haasch DL, Smith HT, Wang S, Song D, Coen ML, Cloutier TE, Tang H, Cheng X, Quinn C, Liu B, Xin Z, Liu G, Fry EH, Stoll V, Ng TI, Banach D, Marcotte D, Burns DJ, Calderwood DJ, Hajduk PJ, ACS Chem Biol. 2011 Jan 20. PMID:21090814
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (60 Kb) [Save to disk]
  • Biological Unit Coordinates (3new.pdb1.gz) 55 Kb
  • LPC: Ligand-Protein Contacts for 3NEW
  • CSU: Contacts of Structural Units for 3NEW
  • Structure Factors (204 Kb)
  • Retrieve 3NEW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3NEW from S2C, [Save to disk]
  • Re-refined 3new structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3NEW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3NEW
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3NEW, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3new_A] [3new]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3NEW: [S_TKc ] by SMART
  • Other resources with information on 3NEW
  • Community annotation for 3NEW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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