3NFU Lyase date Jun 10, 2010
title Crystal Structure Of Probable Glucarate Dehydratase From Chromohalobacter Salexigens Dsm 3043 Complexed With Magnesi
authors Y.Patskovsky, R.Toro, M.Rutter, J.M.Sauder, J.A.Gerlt, S.C.Almo, S.K.Burley, New York Structural Genomix Research Consortium (Nysgxrc), New York Sgx Research Center For Structural Genom (Nysgxrc)
compound source
Molecule: Glucarate Dehydratase
Chain: A, B
Ec: 4.2.1.40
Engineered: Yes
Organism_scientific: Chromohalobacter Salexigens
Organism_taxid: 290398
Strain: Dsm 3043
Atcc: Baa-138, Ncimb 13768
Gene: Csal_2481
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: C 1 2 1
R_factor 0.197 R_Free 0.266
crystal
cell
length a length b length c angle alpha angle beta angle gamma
135.009 105.731 87.991 90.00 128.97 90.00
method X-Ray Diffractionresolution 1.94 Å
ligand GOL, MG, SO4 enzyme Lyase E.C.4.2.1.40 BRENDA
Gene CSAL
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (154 Kb) [Save to disk]
  • Biological Unit Coordinates (3nfu.pdb1.gz) 149 Kb
  • LPC: Ligand-Protein Contacts for 3NFU
  • CSU: Contacts of Structural Units for 3NFU
  • Structure Factors (530 Kb)
  • Retrieve 3NFU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3NFU from S2C, [Save to disk]
  • Re-refined 3nfu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3NFU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3NFU
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3NFU, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3nfu] [3nfu_B] [3nfu_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3NFU: [MR_MLE ] by SMART
  • Other resources with information on 3NFU
  • Community annotation for 3NFU at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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