3NJU Hydrolase date Jun 18, 2010
title Crystal Structure Of The Complex Of Group I Phospholipase A2 Methoxy-Benzoicacid At 1.4a Resolution
authors S.Kaushik, R.Prem Kumar, M.Sinha, P.Kaur, S.Sharma, T.P.Singh
compound source
Molecule: Phospholipase A2 Isoform 3
Chain: A
Synonym: Phosphatidylcholine 2-Acylhydrolase
Ec: 3.1.1.4
 Organism_scientific: Naja Sagittifera
Organism_common: Andaman Cobra
Organism_taxid: 195058
symmetry Space Group: P 41
R_factor 0.174 R_Free 0.224
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.074 42.074 64.253 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.40 Å
ligand ANN, CA enzyme Hydrolase E.C.3.1.1.4 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • Biological Unit Coordinates (3nju.pdb1.gz) 50 Kb
  • LPC: Ligand-Protein Contacts for 3NJU
  • CSU: Contacts of Structural Units for 3NJU
  • Structure Factors (261 Kb)
  • Retrieve 3NJU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3NJU from S2C, [Save to disk]
  • Re-refined 3nju structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3NJU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3NJU
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3NJU, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3nju] [3nju_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3NJU: [PA2c ] by SMART
    • Other resources with information on 3NJU
  • Community annotation for 3NJU at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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