3NPK Transferase date Jun 28, 2010
title The Crystal Structure Of Geranyltranstransferase From Campyl Jejuni
authors Z.Zhang, S.K.Burley, S.Swaminathan, New York Sgx Research Cente Structural Genomics (Nysgxrc)
compound source
Molecule: Geranyltranstransferase
Chain: A, B
Ec: 2.5.1.10
Engineered: Yes
Organism_scientific: Campylobacter Jejuni
Organism_taxid: 195099
Strain: Rm1221
Gene: Cje1816, Ispa
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3) Codon+Ril Stratagene
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Bc-Psgx3(Bc)
symmetry Space Group: P 21 21 2
R_factor 0.156 R_Free 0.185
crystal
cell
length a length b length c angle alpha angle beta angle gamma
97.772 97.957 66.835 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand GOL, MSE, PPV enzyme Transferase E.C.2.5.1.10 BRENDA
note 3NPK is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (191 Kb) [Save to disk]
  • Biological Unit Coordinates (3npk.pdb1.gz) 185 Kb
  • LPC: Ligand-Protein Contacts for 3NPK
  • CSU: Contacts of Structural Units for 3NPK
  • Structure Factors (4562 Kb)
  • Retrieve 3NPK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3NPK from S2C, [Save to disk]
  • Re-refined 3npk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3NPK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3NPK
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3NPK, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3npk_B] [3npk_A] [3npk]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3NPK
  • Community annotation for 3NPK at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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