3NQY	Hydrolase	date	Jun 30, 2010
title	Crystal Structure Of The Autoprocessed Complex Of Vibriolysi With A Single Point Mutation E346a
authors	X.Gao, J.Wang, J.W.Wu, Y.Z.Zhang
compound		source
Molecule: Secreted Metalloprotease Mcp02 Chain: B Fragment: The Catalytic Domain, Residues 205-519 Synonym: Mcp-02 Ec: 3.4.24.25 Engineered: Yes Mutation: Yes		Organism_scientific: Pseudoalteromonas Sp. Organism_taxid: 234831 Strain: Sm9913 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet21b
Molecule: Secreted Metalloprotease Mcp02 Chain: A Fragment: Propeptide Domain, Residues 25-204 Synonym: Mcp-02 Ec: 3.4.24.25 Engineered: Yes Other_details: Propeptide Of Mcp02		Organism_scientific: Pseudoalteromonas Sp. Organism_taxid: 234831 Strain: Sm9913 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet21b
symmetry	Space Group: P 32 2 1	R_factor 0.196 R_Free 0.250
crystal cell	length a length b length c angle alpha angle beta angle gamma 83.009 83.009 154.216 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.60 Å
ligand	CA, ZN	enzyme	Hydrolase E.C.3.4.24.25 BRENDA
Gene Ontology	Chain Function Process Component B
Primary reference	Structural basis for the autoprocessing of zinc metalloproteases in the thermolysin family., Gao X, Wang J, Yu DQ, Bian F, Xie BB, Chen XL, Zhou BC, Lai LH, Wang ZX, Wu JW, Zhang YZ, Proc Natl Acad Sci U S A. 2010 Oct 12;107(41):17569-74. Epub 2010 Sep 27. PMID:20876133

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (81 Kb) [Save to disk] Biological Unit Coordinates (3nqy.pdb1.gz) 75 Kb LPC: Ligand-Protein Contacts for 3NQY CSU: Contacts of Structural Units for 3NQY Structure Factors (145 Kb) Retrieve 3NQY in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3NQY from S2C, [Save to disk] Re-refined 3nqy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3NQY in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3NQY

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3NQY, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3nqy_A] [3nqy_B] [3nqy] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3NQY

Community annotation for 3NQY at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---