3NRK Unknown Function date Jun 30, 2010
title The Crystal Structure Of The Leptospiral Hypothetical Protei
authors P.O.Giuseppe, M.V.Atzingen, A.L.T.O.Nascimento, N.I.T.Zanchin, B.G.Guimaraes
compound source
Molecule: Lic12922
Chain: A
Fragment: Residues 48-362
Engineered: Yes
Organism_scientific: Leptospira Interrogans Serovar Copenha
Organism_taxid: 267671
Strain: Copenhageni, Fiocruz L1-130 Isolate
Gene: Lic12922, Lic_12922
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: C41(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pdest
symmetry Space Group: P 2 3
R_factor 0.199 R_Free 0.218
crystal
cell
length a length b length c angle alpha angle beta angle gamma
137.110 137.110 137.110 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.10 Å
note 3NRK is a representative structure
Gene LIC
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe crystal structure of the leptospiral hypothetical protein LIC12922 reveals homology with the periplasmic chaperone SurA., Giuseppe PO, Atzingen MV, Nascimento AL, Zanchin NI, Guimaraes BG, J Struct Biol. 2010 Oct 21. PMID:20970503
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk]
  • Biological Unit Coordinates (3nrk.pdb1.gz) 50 Kb
  • Biological Unit Coordinates (3nrk.pdb2.gz) 146 Kb
  • CSU: Contacts of Structural Units for 3NRK
  • Structure Factors (121 Kb)
  • Retrieve 3NRK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3NRK from S2C, [Save to disk]
  • Re-refined 3nrk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3NRK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3NRK
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3NRK, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3nrk_A] [3nrk]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3NRK
  • Community annotation for 3NRK at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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