3NSU Signaling Protein date Jul 02, 2010
title A Systematic Screen For Protein-Lipid Interactions In Saccha Cerevisiae
authors O.Gallego, C.Fernandez-Tornero, C.Aguilar-Gurrieri, C.Muller, A.
compound source
Molecule: Phosphatidylinositol 4,5-Bisphosphate-Binding Pro
Chain: A, B
Fragment: Pleckstrin Homology Domain (Unp Residues 469-583)
Synonym: Torc2 Effector Protein Slm1, Synthetic Lethal With Protein 1;
Engineered: Yes
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Brewer'S Yeast,Lager Beer Yeast,Yeast
Organism_taxid: 4932
Gene: Lit2, Slm1, Yil105c
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet100-Dtopo
symmetry Space Group: P 21 21 2
R_factor 0.221 R_Free 0.271
crystal
cell
length a length b length c angle alpha angle beta angle gamma
82.390 73.050 37.510 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand SO4 enzyme
note 3NSU is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceA systematic screen for protein-lipid interactions in Saccharomyces cerevisiae., Gallego O, Betts MJ, Gvozdenovic-Jeremic J, Maeda K, Matetzki C, Aguilar-Gurrieri C, Beltran-Alvarez P, Bonn S, Fernandez-Tornero C, Jensen LJ, Kuhn M, Trott J, Rybin V, Muller CW, Bork P, Kaksonen M, Russell RB, Gavin AC, Mol Syst Biol. 2010 Nov 30;6:430. PMID:21119626
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk]
  • Biological Unit Coordinates (3nsu.pdb1.gz) 20 Kb
  • Biological Unit Coordinates (3nsu.pdb2.gz) 19 Kb
  • LPC: Ligand-Protein Contacts for 3NSU
  • CSU: Contacts of Structural Units for 3NSU
  • Structure Factors (114 Kb)
  • Retrieve 3NSU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3NSU from S2C, [Save to disk]
  • Re-refined 3nsu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3NSU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3NSU
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3NSU, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3nsu] [3nsu_A] [3nsu_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3NSU: [PH ] by SMART
  • Other resources with information on 3NSU
  • Community annotation for 3NSU at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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