3NT2 Oxidoreductase date Jul 02, 2010
title Crystal Structure Of Myo-Inositol Dehydrogenase From Bacillu With Bound Cofactor
authors K.E.Van Straaten, D.R.J.Palmer, D.A.R.Sanders
compound source
Molecule: Inositol 2-Dehydrogenased-Chiro-Inositol 3-Dehyd
Chain: A, B
Synonym: Myo-Inositol 2-Dehydrogenased-Chiro-Inositol 3- Dehydrogenase, Mi 2-Dehydrogenasedci 3-Dehydrogenase;
Ec: 1.1.1.18
Engineered: Yes
Organism_scientific: Bacillus Subtilis
Organism_taxid: 1423
Gene: Bsu39700, E83g, Idh, Iolg, Np_391849.2
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Rosetta
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Phistev
symmetry Space Group: I 21 3
R_factor 0.240 R_Free 0.286
crystal
cell
length a length b length c angle alpha angle beta angle gamma
184.368 184.368 184.368 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand NAD, NAI enzyme Oxidoreductase E.C.1.1.1.18 BRENDA
Gene NP
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural investigation of myo-inositol dehydrogenase from Bacillus subtilis: implications for catalytic mechanism and inositol dehydrogenase subfamily classification., van Straaten KE, Zheng H, Palmer DR, Sanders DA, Biochem J. 2010 Sep 1. PMID:20809899
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (116 Kb) [Save to disk]
  • Biological Unit Coordinates (3nt2.pdb1.gz) 219 Kb
  • Biological Unit Coordinates (3nt2.pdb2.gz) 327 Kb
  • LPC: Ligand-Protein Contacts for 3NT2
  • CSU: Contacts of Structural Units for 3NT2
  • Structure Factors (338 Kb)
  • Retrieve 3NT2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3NT2 from S2C, [Save to disk]
  • Re-refined 3nt2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3NT2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3NT2
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3NT2, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3nt2_A] [3nt2_B] [3nt2]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3NT2
  • Community annotation for 3NT2 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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