3NVF Protein Fibril date Jul 08, 2010
title Iihfgs Segment 138-143 From Human Prion
authors M.I.Apostol, M.R.Sawaya, D.Eisenberg
compound source
Molecule: Major Prion Protein
Chain: A
Synonym: Prp, Prp27-30, Prp33-35c, Ascr
Engineered: Yes
 Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: Iihfgs (Unp Residues 138-143) From Human Pri
symmetry Space Group: P 21 21 2
R_factor 0.212 R_Free 0.226
crystal
cell
length a length b length c angle alpha angle beta angle gamma
27.546 31.017 4.804 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand MPD enzyme
Primary referenceAtomic structures suggest determinants of transmission barriers in mammalian prion disease., Apostol MI, Wiltzius JJ, Sawaya MR, Cascio D, Eisenberg D, Biochemistry. 2011 Feb 16. PMID:21323366
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (5 Kb) [Save to disk]
  • Biological Unit Coordinates (3nvf.pdb1.gz) 4 Kb
  • LPC: Ligand-Protein Contacts for 3NVF
  • CSU: Contacts of Structural Units for 3NVF
  • Structure Factors (10 Kb)
  • Retrieve 3NVF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3NVF from S2C, [Save to disk]
  • Re-refined 3nvf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3NVF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3NVF
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3NVF, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3nvf_A] [3nvf]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3NVF
  • Community annotation for 3NVF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science