3NW8	Viral Protein	date	Jul 09, 2010
title	Glycoprotein B From Herpes Simplex Virus Type 1, Y179s Mutan
authors	S.D.Stampfer, H.Lou, G.H.Cohen, R.J.Eisenberg, E.E.Heldwein
compound		source
Molecule: Envelope Glycoprotein B Chain: B, A, C, D Fragment: Ectodomain (Unp Residues 30 To 730) Synonym: Gb, Gb-1, Gb1 Engineered: Yes Mutation: Yes		Organism_scientific: Human Herpesvirus 1 Organism_common: Hhv-1 Organism_taxid: 10306 Strain: Kos Gene: Gb, Ul27 Expression_system: Spodoptera Frugiperda Expression_system_taxid: 7108 Expression_system_strain: Sf9 Expression_system_vector_type: Baculovirus Expression_system_plasmid: Pvt-Bac
symmetry	Space Group: P 3	R_factor 0.202 R_Free 0.243
crystal cell	length a length b length c angle alpha angle beta angle gamma 117.985 117.985 321.537 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.76 Å
ligand	CL, MRY, NA, NAG	enzyme
Primary reference	Structural Basis of Local, pH-Dependent Conformational Changes in Glycoprotein B from Herpes Simplex Virus Type 1., Stampfer SD, Lou H, Cohen GH, Eisenberg RJ, Heldwein EE, J Virol. 2010 Dec;84(24):12924-33. Epub 2010 Oct 13. PMID:20943984

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (368 Kb) [Save to disk] Biological Unit Coordinates (3nw8.pdb1.gz) 270 Kb Biological Unit Coordinates (3nw8.pdb2.gz) 271 Kb Biological Unit Coordinates (3nw8.pdb3.gz) 267 Kb Biological Unit Coordinates (3nw8.pdb4.gz) 271 Kb LPC: Ligand-Protein Contacts for 3NW8 CSU: Contacts of Structural Units for 3NW8 Structure Factors (903 Kb) Retrieve 3NW8 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3NW8 from S2C, [Save to disk] Re-refined 3nw8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3NW8 in 3D

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Visual 3D analysis of 3NW8

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3NW8, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3nw8_B] [3nw8_A] [3nw8] [3nw8_D] [3nw8_C] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3NW8

Community annotation for 3NW8 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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