3NX4 Oxidoreductase date Jul 12, 2010
title Crystal Structure Of The Yhdh Oxidoreductase From Salmonella In Complex With Nadp
authors S.M.Anderson, Z.Wawrzak, S.Peterson, O.Onopriyenko, T.Skarina, W.F.Anderson, A.Savchenko, Center For Structural Genomics Of Infectious Diseases (Csgid)
compound source
Molecule: Putative Oxidoreductase
Chain: A, B
Engineered: Yes
 Organism_scientific: Salmonella Enterica Subsp. Enterica Se Typhimurium;
Organism_taxid: 99287
Strain: Lt2
Gene: Yhdh, Stm3376
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21-Codonplus(De3)-Ril
symmetry Space Group: C 1 2 1
R_factor 0.155 R_Free 0.191
crystal
cell
length a length b length c angle alpha angle beta angle gamma
103.218 122.364 64.912 90.00 121.10 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand MSE, NAP enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (117 Kb) [Save to disk]
  • Biological Unit Coordinates (3nx4.pdb1.gz) 110 Kb
  • LPC: Ligand-Protein Contacts for 3NX4
  • CSU: Contacts of Structural Units for 3NX4
  • Structure Factors (622 Kb)
  • Retrieve 3NX4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3NX4 from S2C, [Save to disk]
  • Re-refined 3nx4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3NX4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3NX4
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3NX4, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3nx4_A] [3nx4] [3nx4_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3NX4
  • Community annotation for 3NX4 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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