3O71 Transferase Protein Binding date Jul 30, 2010
title Crystal Structure Of Erk2dcc Peptide Complex
authors W.F.Ma, Y.Shang, Z.Y.Wei, W.Y.Wen, W.N.Wang, M.J.Zhang
compound source
Molecule: Mitogen-Activated Protein Kinase 1
Chain: A
Synonym: Map Kinase 1, Mapk 1, Extracellular Signal-Regulat 2, Erk-2, Mitogen-Activated Protein Kinase 2, Map Kinase 2, Map Kinase Isoform P42, P42-Mapk, Ert1;
Ec: 2.7.11.24
Engineered: Yes
Organism_scientific: Rattus Norvegicus
Organism_common: Rat
Organism_taxid: 10116
Gene: Mapk1, Erk2, Mapk, Prkm1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Peptide Of Deleted In Colorectal Cancer
Chain: B
Fragment: Unp Residues 1140-1166
Synonym: Deleted In Colorectal Carcinoma, Isoform Cra_a
Engineered: Yes

Synthetic: Yes
Other_details: This Sequence Occurs Naturally In Rats
symmetry Space Group: P 3 2 1
R_factor 0.199 R_Free 0.240
crystal
cell
length a length b length c angle alpha angle beta angle gamma
87.178 87.178 94.459 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.95 Å
ligand SCN enzyme Transferase E.C.2.7.11.24 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • MAP kinase activity
  • MAP kinase kinase activity


  • B


    Primary referencePhosphorylation of DCC by ERK2 is facilitated by direct docking of the receptor P1 domain to the kinase., Ma W, Shang Y, Wei Z, Wen W, Wang W, Zhang M, Structure. 2010 Nov 10;18(11):1502-11. PMID:21070949
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (122 Kb) [Save to disk]
  • Biological Unit Coordinates (3o71.pdb1.gz) 115 Kb
  • LPC: Ligand-Protein Contacts for 3O71
  • CSU: Contacts of Structural Units for 3O71
  • Structure Factors (441 Kb)
  • Retrieve 3O71 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3O71 from S2C, [Save to disk]
  • Re-refined 3o71 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3O71 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3O71
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3O71, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3o71_A] [3o71_B] [3o71]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3O71: [S_TKc ] by SMART
  • Other resources with information on 3O71
  • Community annotation for 3O71 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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