3OCI	Transcription	date	Aug 10, 2010
title	Crystal Structure Of Tbp (Tata Box Binding Protein)
authors	S.Cui, P.Wollmann, M.Moldt, K.P.Hopfner
compound		source
Molecule: Transcription Initiation Factor Tfiid (Tfiid-1) Chain: A, B Synonym: Tata Box Binding Protein Engineered: Yes		Organism_scientific: Encephalitozoon Cuniculi Organism_common: Microsporidian Parasite Organism_taxid: 6035 Gene: Ecu04_1440 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: H 3	R_factor 0.179 R_Free 0.215
crystal cell	length a length b length c angle alpha angle beta angle gamma 104.400 104.400 129.060 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.90 Å
ligand	EDO	enzyme
Gene	ECU04
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structure and mechanism of the Swi2/Snf2 remodeller Mot1 in complex with its substrate TBP., Wollmann P, Cui S, Viswanathan R, Berninghausen O, Wells MN, Moldt M, Witte G, Butryn A, Wendler P, Beckmann R, Auble DT, Hopfner KP, Nature. 2011 Jul 6;475(7356):403-7. doi: 10.1038/nature10215. PMID:21734658

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (137 Kb) [Save to disk] Biological Unit Coordinates (3oci.pdb1.gz) 129 Kb LPC: Ligand-Protein Contacts for 3OCI CSU: Contacts of Structural Units for 3OCI Structure Factors (271 Kb) Retrieve 3OCI in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3OCI from S2C, [Save to disk] Re-refined 3oci structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3OCI in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3OCI

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3OCI, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3oci_A] [3oci_B] [3oci] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3OCI

Community annotation for 3OCI at PDBWiki (http://pdbwiki.org)

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