3ODL	Isomerase Immunosuppressant	date	Aug 11, 2010
title	Crystal Structure Of Cyclophilin A In Complex With Voclospor Isa247
authors	A.Kuglstatter, M.Stihle, J.Benz, M.Hennig
compound		source
Molecule: Cyclophilin A Chain: A, C, E, G, I, K, M, O, Q, S Synonym: Peptidyl-Prolyl Cis-Trans Isomerase Ec: 5.2.1.8 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ppia Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet21a
Molecule: Voclosporin Chain: B, D, F, H, J, L, N, P, R, T Synonym: Z-Isa247, Isatx-247, Luveniq Engineered: Yes Other_details: A Modified Cyclosporin A		Synthetic: Yes Organism_scientific: Tolypocladium Inflatum Organism_taxid: 29910
symmetry	Space Group: P 21 21 21	R_factor 0.169 R_Free 0.207
crystal cell	length a length b length c angle alpha angle beta angle gamma 132.423 141.124 149.069 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.31 Å
ligand	ABA, DAL, MLE, MVA, SAR, YYA	enzyme	Isomerase E.C.5.2.1.8 BRENDA
Gene Ontology	Chain Function Process Component S, A, O, K, E, Q, M, C, I, G
Primary reference	Structural basis for the cyclophilin A binding affinity and immunosuppressive potency of E-ISA247 (voclosporin)., Kuglstatter A, Mueller F, Kusznir E, Gsell B, Stihle M, Thoma R, Benz J, Aspeslet L, Freitag D, Hennig M, Acta Crystallogr D Biol Crystallogr. 2011 Feb;67(Pt 2):119-23. Epub 2011, Jan 15. PMID:21245533

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (310 Kb) [Save to disk] Biological Unit Coordinates (3odl.pdb1.gz) 35 Kb Biological Unit Coordinates (3odl.pdb2.gz) 35 Kb Biological Unit Coordinates (3odl.pdb3.gz) 36 Kb Biological Unit Coordinates (3odl.pdb4.gz) 35 Kb Biological Unit Coordinates (3odl.pdb5.gz) 34 Kb Biological Unit Coordinates (3odl.pdb6.gz) 34 Kb Biological Unit Coordinates (3odl.pdb7.gz) 35 Kb Biological Unit Coordinates (3odl.pdb8.gz) 35 Kb Biological Unit Coordinates (3odl.pdb9.gz) 35 Kb LPC: Ligand-Protein Contacts for 3ODL CSU: Contacts of Structural Units for 3ODL Structure Factors (2135 Kb) Retrieve 3ODL in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3ODL from S2C, [Save to disk] Re-refined 3odl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3ODL in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3ODL

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3ODL, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3odl_R] [3odl_J] [3odl_C] [3odl_G] [3odl_S] [3odl_A] [3odl_E] [3odl_M] [3odl_O] [3odl_D] [3odl_F] [3odl] [3odl_T] [3odl_I] [3odl_K] [3odl_B] [3odl_P] [3odl_N] [3odl_L] [3odl_H] [3odl_Q] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3ODL

Community annotation for 3ODL at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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