3OFU Oxidoreductase date Aug 16, 2010
title Crystal Structure Of Cytochrome P450 Cyp101c1
authors W.Zhou, M.Ma, S.G.Bell, W.Yang, Y.Hao, N.H.Rees, M.Bartlam, L.L.Wo
compound source
Molecule: Cytochrome P450
Chain: A, B, C, D, E, F
Synonym: Cyp101c1
Engineered: Yes
Organism_scientific: Novosphingobium Aromaticivorans
Organism_taxid: 279238
Strain: Dsm 12444
Gene: Saro_2249
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pet28a
symmetry Space Group: P 1 21 1
R_factor 0.193 R_Free 0.303
crystal
cell
length a length b length c angle alpha angle beta angle gamma
68.360 113.418 150.234 90.00 89.90 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand HEM, ID3 enzyme
Gene SARO
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Primary referenceStructural Analysis of CYP101C1 from Novosphingobium aromaticivorans DSM12444., Ma M, Bell SG, Yang W, Hao Y, Rees NH, Bartlam M, Zhou W, Wong LL, Rao Z, Chembiochem. 2011 Jan 3;12(1):88-99. PMID:21154803
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (381 Kb) [Save to disk]
  • Biological Unit Coordinates (3ofu.pdb1.gz) 66 Kb
  • Biological Unit Coordinates (3ofu.pdb2.gz) 67 Kb
  • Biological Unit Coordinates (3ofu.pdb3.gz) 68 Kb
  • Biological Unit Coordinates (3ofu.pdb4.gz) 67 Kb
  • Biological Unit Coordinates (3ofu.pdb5.gz) 66 Kb
  • Biological Unit Coordinates (3ofu.pdb6.gz) 66 Kb
  • LPC: Ligand-Protein Contacts for 3OFU
  • CSU: Contacts of Structural Units for 3OFU
  • Structure Factors (550 Kb)
  • Retrieve 3OFU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3OFU from S2C, [Save to disk]
  • Re-refined 3ofu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3OFU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3OFU
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3OFU, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ofu] [3ofu_F] [3ofu_E] [3ofu_B] [3ofu_C] [3ofu_A] [3ofu_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3OFU
  • Community annotation for 3OFU at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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