3OGG	Toxin	date	Aug 16, 2010
title	Crystal Structure Of The Receptor Binding Domain Of Botulinu Neurotoxin D
authors	Y.Zhang, X.Gao, L.Qin, G.W.Buchko, H.Robinson, S.M.Varnum
compound		source
Molecule: Botulinum Neurotoxin Type D Chain: A Synonym: Bontd, Bontoxilysin-D, Botulinum Neurotoxin D Lig Botulinum Neurotoxin D Heavy Chain; Ec: 3.4.24.69 Engineered: Yes		Organism_scientific: Clostridium Botulinum Organism_taxid: 1491 Gene: Botd, Botulinum Neurotoxin D Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl-21 (De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pjexpress
symmetry	Space Group: P 21 21 21	R_factor 0.173 R_Free 0.192
crystal cell	length a length b length c angle alpha angle beta angle gamma 60.782 89.680 93.929 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.65 Å
ligand		enzyme	Hydrolase E.C.3.4.24.69 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Structural analysis of the receptor binding domain of botulinum neurotoxin serotype D., Zhang Y, Buchko GW, Qin L, Robinson H, Varnum SM, Biochem Biophys Res Commun. 2010 Oct 29;401(4):498-503. Epub 2010 Sep 19. PMID:20858456

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (80 Kb) [Save to disk] Biological Unit Coordinates (3ogg.pdb1.gz) 76 Kb CSU: Contacts of Structural Units for 3OGG Structure Factors (545 Kb) Retrieve 3OGG in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3OGG from S2C, [Save to disk] Re-refined 3ogg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3OGG in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3OGG

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3OGG, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3ogg] [3ogg_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3OGG

Community annotation for 3OGG at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---