3OJ2 Cytokine Signaling Protein date Aug 20, 2010
title Crystal Structure Of Fgf1 Complexed With The Ectodomain Of F Harboring The A172f Pfeiffer Syndrome Mutation
authors A.Beenken, M.Mohammadi
compound source
Molecule: Heparin-Binding Growth Factor 1
Chain: A, B
Synonym: Hbgf-1, Acidic Fibroblast Growth Factor, Afgf, Bet Endothelial Cell Growth Factor, Ecgf-Beta;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fgf1, Fgfa
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 De3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a

Molecule: Fibroblast Growth Factor Receptor 2
Chain: C, D
Synonym: Fgfr-2, Keratinocyte Growth Factor Receptor, K-Sam
Ec: 2.7.10.1
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bek, Fgfr2, Kgfr, Ksam
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 De3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: P 32
R_factor 0.262 R_Free 0.294
crystal
cell
length a length b length c angle alpha angle beta angle gamma
77.945 77.945 137.555 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.20 Å
ligand SO4 enzyme Transferase E.C.2.7.10.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referencePlasticity in interactions of fibroblast growth factor 1 (FGF1) N terminus with FGF receptors underlies promiscuity of FGF1., Beenken A, Eliseenkova AV, Ibrahimi OA, Olsen SK, Mohammadi M, J Biol Chem. 2012 Jan 27;287(5):3067-78. Epub 2011 Nov 4. PMID:22057274
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (115 Kb) [Save to disk]
  • Biological Unit Coordinates (3oj2.pdb1.gz) 57 Kb
  • Biological Unit Coordinates (3oj2.pdb2.gz) 56 Kb
  • LPC: Ligand-Protein Contacts for 3OJ2
  • CSU: Contacts of Structural Units for 3OJ2
  • Structure Factors (277 Kb)
  • Retrieve 3OJ2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3OJ2 from S2C, [Save to disk]
  • Re-refined 3oj2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3OJ2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3OJ2
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3OJ2, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3oj2_B] [3oj2_D] [3oj2_C] [3oj2_A] [3oj2]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3OJ2: [FGF] [IGc2 ] by SMART
  • Other resources with information on 3OJ2
  • Community annotation for 3OJ2 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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