3OOB Isomerase date Aug 30, 2010
title Structural And Functional Insights Of Directly Targeting Pin Epigallocatechin-3-Gallate
authors D.V.Urusova, J.H.Shim, D.J.Kim, S.K.Jung, T.A.Zykova, A.M.Bode,
compound source
Molecule: Peptidyl-Prolyl Cis-Trans Isomerase Nima-Interact
Chain: A
Synonym: Peptidyl-Prolyl Cis-Trans Isomerase Pin1, Ppiase P Rotamase Pin1;
Ec: 5.2.1.8
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pin1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a(+)
symmetry Space Group: P 31 2 1
R_factor 0.190 R_Free 0.232
crystal
cell
length a length b length c angle alpha angle beta angle gamma
69.409 69.409 79.268 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.89 Å
ligand KDH, PE4, SO4 enzyme Isomerase E.C.5.2.1.8 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceEpigallocatechin-gallate suppresses tumorigenesis by directly targeting Pin1., Urusova D, Shim J, Kim DJ, Jung SK, Zykova T, Carper A, Bode AM, Dong Z, Cancer Prev Res (Phila). 2011 Jul 12. PMID:21750208
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (35 Kb) [Save to disk]
  • Biological Unit Coordinates (3oob.pdb1.gz) 29 Kb
  • LPC: Ligand-Protein Contacts for 3OOB
  • CSU: Contacts of Structural Units for 3OOB
  • Structure Factors (352 Kb)
  • Retrieve 3OOB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3OOB from S2C, [Save to disk]
  • Re-refined 3oob structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3OOB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3OOB
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3OOB, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3oob_A] [3oob]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3OOB: [WW ] by SMART
  • Other resources with information on 3OOB
  • Community annotation for 3OOB at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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