3OQ8 Lyase date Sep 02, 2010
title Crystal Structure Of Isocitrate Lyase From Brucella Melitens To The Product Mimic Malonate
authors Seattle Structural Genomics Center For Infectious Disease (S
compound source
Molecule: Isocitrate Lyase
Chain: A, B, C, D
Ec: 4.1.3.1
Engineered: Yes
 Organism_scientific: Brucella Melitensis Biovar Abortus
Organism_taxid: 359391
Strain: 2308
Gene: Bab1_1631
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ava0421
symmetry Space Group: P 21 21 21
R_factor 0.149 R_Free 0.199
crystal
cell
length a length b length c angle alpha angle beta angle gamma
77.500 136.030 181.770 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.25 Å
ligand EDO, MLA, NA enzyme Lyase E.C.4.1.3.1 BRENDA
Gene BAB1
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (537 Kb) [Save to disk]
  • Biological Unit Coordinates (3oq8.pdb1.gz) 528 Kb
  • LPC: Ligand-Protein Contacts for 3OQ8
  • CSU: Contacts of Structural Units for 3OQ8
  • Structure Factors (1402 Kb)
  • Retrieve 3OQ8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3OQ8 from S2C, [Save to disk]
  • Re-refined 3oq8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3OQ8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3OQ8
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3OQ8, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3oq8_A] [3oq8_B] [3oq8_D] [3oq8] [3oq8_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3OQ8
  • Community annotation for 3OQ8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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