3OSF	Transcription Dna	date	Sep 09, 2010
title	The Structure Of Protozoan Parasite Trichomonas Vaginalis My Complex With Mre-2f-13 Dna
authors	I.Jiang, C.K.Tsai, S.C.Chen, S.H.Wang, I.Amiraslanov, C.F.Chang, W J.H.Tai, Y.C.Liaw, T.H.Huang
compound		source
Molecule: Myb21 Chain: A, D Fragment: Myb2 R2r3 Domain Synonym: Myb-Like Dna-Binding Domain Containing Protein Engineered: Yes		Organism_scientific: Trichomonas Vaginalis Organism_taxid: 5722 Gene: Tvag_211210 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet-22b(+)
Molecule: 5'-D(Cptpgptpaptpcpgptpcptptpg)-3' Chain: B, E Synonym: Mre-2f Engineered: Yes		Synthetic: Yes
Molecule: 5'-D(Cpapapgpapcpgpaptpapcpapg)-3' Chain: C, F Synonym: Mre-2f Engineered: Yes		Synthetic: Yes
symmetry	Space Group: P 21 21 21	R_factor 0.206 R_Free 0.258
crystal cell	length a length b length c angle alpha angle beta angle gamma 73.941 77.352 84.410 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.03 Å
ligand	IPA	enzyme
Gene	TVAG
Primary reference	Molecular basis of the recognition of the ap65-1 gene transcription promoter elements by a Myb protein from the protozoan parasite Trichomonas vaginalis., Jiang I, Tsai CK, Chen SC, Wang SH, Amiraslanov I, Chang CF, Wu WJ, Tai JH, Liaw YC, Huang TH, Nucleic Acids Res. 2011 Jul 19. PMID:21771861

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (67 Kb) [Save to disk] Biological Unit Coordinates (3osf.pdb1.gz) 31 Kb Biological Unit Coordinates (3osf.pdb2.gz) 32 Kb LPC: Ligand-Protein Contacts for 3OSF CSU: Contacts of Structural Units for 3OSF Structure Factors (233 Kb) Retrieve 3OSF in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3OSF from S2C, [Save to disk] Re-refined 3osf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3OSF in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3OSF

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3OSF, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3osf] [3osf_F] [3osf_A] [3osf_E] [3osf_B] [3osf_C] [3osf_D] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3OSF: [SANT ] by SMART

Other resources with information on 3OSF

Community annotation for 3OSF at PDBWiki (http://pdbwiki.org)

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