3OZV Lipid Binding Protein date Sep 27, 2010
title The Crystal Structure Of Flavohemoglobin From R. Eutrophus I With Econazole
authors E.El Hammi, E.Warkentin, U.Demmer, U.Ermler, L.Baciou
compound source
Molecule: Flavohemoglobin
Chain: B, A
Synonym: Hemoglobin-Like Protein, Flavohemoglobin, Fhp, Nit Dioxygenase, No Oxygenase, Nod;
Ec: 1.14.12.17
Engineered: Yes
Organism_scientific: Ralstonia Eutropha
Organism_common: Cupriavidus Necator
Organism_taxid: 381666
Strain: H16
Gene: Hmp, Fhp, Phg200
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
symmetry Space Group: P 43 21 2
R_factor 0.210 R_Free 0.248
crystal
cell
length a length b length c angle alpha angle beta angle gamma
87.220 87.220 291.260 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand DGG, ECN, FAD, HEM, PO4 enzyme Oxidoreductase E.C.1.14.12.17 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure of Ralstonia eutropha Flavohemoglobin in Complex with Three Antibiotic Azole Compounds., El Hammi E, Warkentin E, Demmer U, Limam F, Marzouki NM, Ermler U, Baciou L, Biochemistry. 2011 Feb 22;50(7):1255-1264. Epub 2011 Jan 20. PMID:21210640
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (145 Kb) [Save to disk]
  • Biological Unit Coordinates (3ozv.pdb1.gz) 70 Kb
  • Biological Unit Coordinates (3ozv.pdb2.gz) 70 Kb
  • Biological Unit Coordinates (3ozv.pdb3.gz) 136 Kb
  • LPC: Ligand-Protein Contacts for 3OZV
  • CSU: Contacts of Structural Units for 3OZV
  • Structure Factors (664 Kb)
  • Retrieve 3OZV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3OZV from S2C, [Save to disk]
  • Re-refined 3ozv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3OZV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3OZV
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3OZV, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ozv] [3ozv_A] [3ozv_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3OZV
  • Community annotation for 3OZV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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