3P0C Signaling Protein date Sep 28, 2010
title Nischarin Px-Domain
authors P.Schutz, T.Karlberg, C.H.Arrowsmith, H.Berglund, C.Bountra, R.Co A.M.Edwards, S.Flodin, A.Flores, S.Graslund, M.Hammarstrom, I.Jo S.Kol, T.Kotenyova, E.Kouznetsova, M.Moche, T.Nyman, C.Persson, M.I.Siponen, A.G.Thorsell, L.Tresaugues, S.Van Der Berg, E.Wahl M.Welin, J.Weigelt, P.Nordlund, H.Schuler, Structural Genomics Consortium (Sgc)
compound source
Molecule: Nischarin
Chain: A, B
Fragment: Px-Domain
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nisch, Iras, Kiaa0975
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3) R3 Prare
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic-Bsa4
symmetry Space Group: P 21 21 21
R_factor 0.174 R_Free 0.210
crystal
cell
length a length b length c angle alpha angle beta angle gamma
57.880 64.780 80.680 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.27 Å
ligand GOL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (78 Kb) [Save to disk]
  • Biological Unit Coordinates (3p0c.pdb1.gz) 38 Kb
  • Biological Unit Coordinates (3p0c.pdb2.gz) 37 Kb
  • Biological Unit Coordinates (3p0c.pdb3.gz) 74 Kb
  • LPC: Ligand-Protein Contacts for 3P0C
  • CSU: Contacts of Structural Units for 3P0C
  • Structure Factors (238 Kb)
  • Retrieve 3P0C in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3P0C from S2C, [Save to disk]
  • Re-refined 3p0c structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3P0C in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3P0C
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3P0C, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3p0c] [3p0c_B] [3p0c_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3P0C: [PX ] by SMART
    • Other resources with information on 3P0C
  • Community annotation for 3P0C at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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