3P5K	Transferase Transferase Inhibitor	date	Oct 08, 2010
title	P38 Inhibitor-Bound
authors	H.Namboodiri
compound		source
Molecule: Mitogen-Activated Protein Kinase 14 Chain: A Synonym: Map Kinase 14, Mapk 14, Crk1, Mitogen-Activated Pr Kinase P38 Alpha, Map Kinase P38 Alpha; Ec: 2.7.11.24 Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Gene: Mapk14, Crk1, Csbp1, Csbp2 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 21 21 21	R_factor 0.210 R_Free 0.265
crystal cell	length a length b length c angle alpha angle beta angle gamma 67.950 71.080 75.550 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.09 Å
ligand	BOG, P5K BindingDB	enzyme	Transferase E.C.2.7.11.24 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Discovery of a novel class of non-ATP site DFG-out state p38 inhibitors utilizing computationally assisted virtual fragment-based drug design (vFBDD)., Moffett K, Konteatis Z, Nguyen D, Shetty R, Ludington J, Fujimoto T, Lee KJ, Chai X, Namboodiri H, Karpusas M, Dorsey B, Guarnieri F, Bukhtiyarova M, Springman E, Michelotti E, Bioorg Med Chem Lett. 2011 Sep 28. PMID:22014550

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (62 Kb) [Save to disk] Biological Unit Coordinates (3p5k.pdb1.gz) 57 Kb LPC: Ligand-Protein Contacts for 3P5K CSU: Contacts of Structural Units for 3P5K Structure Factors (330 Kb) Retrieve 3P5K in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3P5K from S2C, [Save to disk] Re-refined 3p5k structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3P5K in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3P5K

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3P5K, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3p5k_A] [3p5k] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3P5K: [S_TKc ] by SMART

Other resources with information on 3P5K

Community annotation for 3P5K at PDBWiki (http://pdbwiki.org)

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